Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3291Major Facilitator Superfamily protein. (432 aa)    
Predicted Functional Partners:
sldA
Glycerol dehydrogenase large subunit.
       0.608
LO55_2892
Sugar (and other) transporter family protein.
  
  
  0.592
LO55_3460
SP: MFS transporter, sugar porter family protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
  
  0.566
LO55_3705
SP: MFS transporter, sugar porter family protein.
  
  
  0.536
LO55_3290
Transketolase, C-terminal domain protein.
     
 0.520
LO55_3289
Dehydrogenase E1 component family protein.
       0.518
LO55_3293
Short chain dehydrogenase family protein.
       0.466
LO55_4221
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
  
  0.453
pheA
CM_P2: chorismate mutase.
   
 
 0.424
LO55_3822
Bacterial regulatory s, gntR family protein.
 
   
 0.415
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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