Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
urtBurea_trans_UrtB: urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family. (497 aa)    
Predicted Functional Partners:
LO55_3298
Receptor ligand binding region family protein.
 
 
 0.999
urtC
urea_trans_UrtC: urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
urtD
urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD.
 
 
 0.999
urtE
urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE.
 
 
 0.999
LO55_4777
ABC transporter family protein.
 
 
 0.973
LO55_2382
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.970
LO55_2383
ABC transporter family protein.
 
 
 0.966
LO55_4780
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.958
LO55_2615
Receptor ligand binding region family protein.
 
 
 0.931
LO55_1159
Receptor ligand binding region family protein.
 
 
 0.927
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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