STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_330Sensory box protein. (367 aa)    
Predicted Functional Partners:
ntrC
Nitrogen regulation protein NR; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.989
LO55_2870
Response regulator.
 
 0.986
LO55_4536
Response regulator.
 
 0.986
glnB
Nitrogen regulatory P-II protein; Belongs to the P(II) protein family.
  
 0.977
LO55_725
Nitrogen regulatory P-II family protein; Belongs to the P(II) protein family.
  
 0.973
LO55_1928
GGDEF: diguanylate cyclase domain protein.
  
 0.954
LO55_4555
Sensory box protein.
 
 
0.938
LO55_3640
GGDEF: diguanylate cyclase domain protein.
  
 0.924
LO55_121
His Kinase A domain protein.
 
0.922
LO55_1825
GGDEF: diguanylate cyclase domain protein.
  
 0.906
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.