Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_331Hypothetical protein. (174 aa)    
Predicted Functional Partners:
LO55_330
Sensory box protein.
       0.812
fimV
fimV_core: FimV N-terminal domain.
  
     0.758
LO55_2048
Transglycosylase SLT domain protein.
 
     0.755
LO55_3194
Hypothetical protein.
  
     0.753
LO55_3623
Hypothetical protein.
  
     0.744
LO55_1035
Dynamin family protein.
  
     0.739
LO55_1223
STAS domain protein.
  
     0.739
LO55_2529
Kinase domain protein.
  
     0.712
LO55_697
Sporulation related domain protein.
  
     0.710
LO55_2091
cheW-like domain protein.
  
     0.704
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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