Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_3318Glycosyl hydrolases 2 family protein. (898 aa)    
Predicted Functional Partners:
LO55_3319
Aman2_put: alpha-1,2-mannosidase family protein.
 
   
 0.829
LO55_3323
Aman2_put: alpha-1,2-mannosidase family protein.
 
   
 0.729
LO55_942
Beta-galactosidase family protein.
 
 
 0.645
LO55_3317
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.637
LO55_1153
Aman2_put: alpha-1,2-mannosidase family protein.
 
   
 0.628
glk-3
Glk: glucokinase; Belongs to the bacterial glucokinase family.
     
 0.624
glk-4
Glk: glucokinase; Belongs to the bacterial glucokinase family.
     
 0.624
glk-5
Glk: glucokinase; Belongs to the bacterial glucokinase family.
     
 0.624
LO55_4204
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
 
  
 0.609
LO55_3306
Alpha-galactosidase domain protein.
 
  
 0.600
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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