Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3322pfkB carbohydrate kinase family protein. (311 aa)    
Predicted Functional Partners:
LO55_3321
N-acylglucosamine 2-epimerase.
 
  
 0.924
pgi
Phosphoglucose isomerase family protein; Belongs to the GPI family.
  
 
 0.896
LO55_5125
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.896
LO55_3320
Bacterial regulatory s, lacI family protein.
 
 
 0.892
LO55_80
SIS domain protein.
  
 
 0.882
LO55_720
PTS system fructose IIA component family protein.
    
 0.880
LO55_3573
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
  
 
 0.859
glmS
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
     
 0.858
fbp
Fructose-1-6-bisphosphatase family protein; Belongs to the FBPase class 1 family.
     
 0.855
LO55_3585
Aldo/keto reductase family protein.
    
 0.855
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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