STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3323Aman2_put: alpha-1,2-mannosidase family protein. (823 aa)    
Predicted Functional Partners:
LO55_3321
N-acylglucosamine 2-epimerase.
 
     0.829
LO55_3322
pfkB carbohydrate kinase family protein.
       0.785
LO55_3320
Bacterial regulatory s, lacI family protein.
 
     0.756
gluP-2
gluP: glucose/galactose transporter WARNING family protein.
 
     0.730
LO55_3318
Glycosyl hydrolases 2 family protein.
 
     0.729
LO55_3319
Aman2_put: alpha-1,2-mannosidase family protein.
 
    
0.569
LO55_3336
Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family.
     
  0.499
gluP
gluP: glucose/galactose transporter WARNING family protein.
 
     0.497
LO55_3317
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.496
LO55_3707
Glycosyl hydrolase family 20, catalytic domain protein.
 
   
 0.453
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.