Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3347Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein. (388 aa)    
Predicted Functional Partners:
garD
galactar-dH20: galactarate dehydratase.
 
  
 0.866
LO55_5180
apbA_panE: 2-dehydropantoate 2-reductase family protein.
  
    0.784
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.740
rpe
Rpe: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
  0.740
LO55_3346
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
 
     0.619
LO55_3700
TTC: tartrate dehydrogenase.
 
     0.531
LO55_3349
TTC: tartrate dehydrogenase.
 
     0.530
LO55_3158
D-glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 0.524
LO55_2238
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein.
  
  
 0.515
gudD
Glucar-dehydr: glucarate dehydratase.
  
  
 0.511
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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