Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3352Amidohydrolase family protein. (451 aa)    
Predicted Functional Partners:
xdhB
xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit.
 
 
 0.777
xdhA
xanthine_xdhA: xanthine dehydrogenase, small subunit.
 
  
  0.764
LO55_3426
4Fe-4S binding domain protein.
  
 
  0.751
xapA
Xanthosine phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
    
 0.747
hutI
hutI: imidazolonepropionase.
    
 0.743
hutG
hutG_amidohyd: N-formylglutamate deformylase.
  
 
 0.738
LO55_1399
Phosphoribosyl transferase domain protein.
    
 0.732
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.726
LO55_4259
Hydantoinase/oxoprolinase family protein.
     
  0.713
dcm
Dcm: DNA (cytosine-5-)-methyltransferase family protein.
  
 
  0.709
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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