Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LO55_3366Hypothetical protein; B_ant_repeat: conserved repeat domain protein. (1618 aa)    
Predicted Functional Partners:
LO55_3367
Hypothetical protein; B_ant_repeat: conserved repeat domain protein.
 
  
 0.921
LO55_3365
Hypothetical protein; B_ant_repeat: conserved repeat domain protein.
 
     0.850
LO55_3368
Hypothetical protein; B_ant_repeat: conserved repeat domain protein.
 
     0.849
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
 0.725
LO55_1584
Matrixin family protein.
   
 0.673
LO55_4751
ftsK/SpoIIIE family protein.
    
 
 0.651
LO55_3781
Hypothetical protein.
    
   0.633
LO55_758
tonB dependent receptor family protein.
  
 
   0.605
LO55_4742
Low molecular weight phosphotyrosine phosphatase family protein.
    
 
 0.554
LO55_1638
tonB dependent receptor family protein.
    
   0.551
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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