Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LO55_3386Universal stress family protein. (277 aa)    
Predicted Functional Partners:
LO55_3385
Hypothetical protein.
  
    0.674
LO55_2590
ATPase_P-type: HAD ATPase, P-type, IC family protein.
 
  
 0.574
LO55_2144
Ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein.
  
  
 0.539
LO55_1963
Ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein.
  
  
 0.514
LO55_140
Sigma 54 modulation / S30EA ribosomal family protein.
  
  
 0.488
LO55_1907
ompW family protein.
 
  
 0.483
LO55_1410
Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein.
 
  
 0.476
LO55_2223
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.474
LO55_3387
Putative membrane protein.
       0.414
gap
GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
  
 0.409
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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