Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3396Cbb3-type cytochrome oxidase component FixQ family protein. (56 aa)    
Predicted Functional Partners:
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 0.996
ccoO
ccoO: cytochrome c oxidase, cbb3-type, subunit II.
  
 
 0.991
ccoN
ccoN: cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.989
LO55_4056
Cytochrome c family protein.
  
 
 0.965
LO55_4057
Cytochrome C and Quinol oxidase polypeptide I family protein.
  
 
 0.965
coxB-2
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 0.952
LO55_1995
Cytochrome c family protein.
  
 0.942
ccoG
ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG.
  
  
 0.898
LO55_547
Cytochrome c oxidase subunit III family protein.
     
 0.853
coxB
coxB: cytochrome c oxidase, subunit II.
   
 
 0.768
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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