Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3422Putative lipoprotein. (146 aa)    
Predicted Functional Partners:
LO55_3426
4Fe-4S binding domain protein.
  
    0.777
LO55_3423
Hypothetical protein.
       0.775
LO55_3424
Hypothetical protein.
       0.773
LO55_3425
Hypothetical protein.
       0.773
LO55_3421
formate-DH-gamm: formate dehydrogenase, gamma subunit.
       0.757
LO55_3420
Putative lipoprotein.
       0.748
LO55_3419
4Fe-4S dicluster domain protein.
       0.746
LO55_2199
Adenylate and Guanylate cyclase catalytic domain protein.
     
  0.704
ribB-2
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.696
LO55_3418
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.681
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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