STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_34283-demethylubiquinone-9 3-methyltransferase family protein. (163 aa)    
Predicted Functional Partners:
LO55_3427
AMP-binding enzyme family protein.
       0.675
LO55_2062
3-demethylubiquinone-9 3-methyltransferase family protein.
 
  
 0.641
LO55_3082
Glyoxalase-like domain protein.
 
  
 0.636
ubiG
3-demethylubiquinone-9 3-O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
 
  0.545
LO55_3429
SET domain protein.
 
     0.542
LO55_3422
Putative lipoprotein.
       0.461
LO55_3423
Hypothetical protein.
       0.461
LO55_3424
Hypothetical protein.
       0.461
LO55_3425
Hypothetical protein.
       0.461
LO55_3426
4Fe-4S binding domain protein.
       0.461
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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