STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3438NADH:flavin oxidoreductase / NADH oxidase family protein. (793 aa)    
Predicted Functional Partners:
LO55_3439
enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.940
LO55_3441
Endoribonuclease L-PSP family protein.
 
  
 0.924
LO55_5154
AMP-binding enzyme family protein.
  
 0.919
LO55_3440
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
 
 0.903
LO55_3437
Aminotransferase class I and II family protein.
  
 
 0.843
LO55_101
Electron transfer flavodomain protein.
  
 
 0.834
LO55_4020
Electron transfer flavodomain protein.
  
 
 0.834
LO55_412
Fatty acid hydroxylase superfamily protein.
   
 0.822
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.817
LO55_222
Fatty acid hydroxylase superfamily protein.
   
 0.812
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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