Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3441Endoribonuclease L-PSP family protein. (130 aa)    
Predicted Functional Partners:
LO55_3439
enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.927
LO55_3438
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
    0.922
LO55_3440
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
 
   0.892
LO55_5154
AMP-binding enzyme family protein.
 
     0.752
LO55_5153
Winged helix DNA-binding domain protein.
 
     0.748
pheA
CM_P2: chorismate mutase.
    
 0.719
LO55_1409
Aminotransferase class IV family protein.
    
 0.677
LO55_2886
Isochorismatase family protein.
  
 
 0.613
LO55_884
Isochorismatase family protein.
  
 
 0.613
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.598
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.