STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fghAS-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde. (280 aa)    
Predicted Functional Partners:
LO55_617
adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 0.999
LO55_4721
adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 0.998
LO55_1685
Metal-sensitive transcriptional repressor family protein.
  
  
 0.902
LO55_4172
Zinc-binding dehydrogenase family protein.
  
 
 0.747
LO55_4728
Zinc-binding dehydrogenase family protein.
  
 
 0.747
LO55_1157
Aminotransferase class-V family protein.
  
 
 0.685
LO55_5171
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
    
 0.673
LO55_5175
NADH-dependent formate dehydrogenase delta subunit FdsD family protein.
    
  0.650
LO55_1359
NADH:flavin oxidoreductase / NADH oxidase family protein.
  
 
 0.648
LO55_5173
Fdh-alpha: formate dehydrogenase, alpha subunit.
    
  0.648
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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