STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lasIAcyl-homoserine-lactone synthase. (193 aa)    
Predicted Functional Partners:
lasR
Transcriptional activator protein lasR.
 
 0.998
LO55_3432
Hypothetical protein.
  
 
 0.950
LO55_1928
GGDEF: diguanylate cyclase domain protein.
    
 0.738
LO55_4091
Hypothetical protein.
 
  
 0.738
LO55_4536
Response regulator.
  
  
 0.731
LO55_3640
GGDEF: diguanylate cyclase domain protein.
    
 0.726
LO55_2870
Response regulator.
     
 0.694
LO55_1825
GGDEF: diguanylate cyclase domain protein.
    
 0.679
LO55_224
GGDEF: diguanylate cyclase domain protein.
    
 0.679
mtnN
MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
     
 0.628
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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