STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phaZPHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein. (411 aa)    
Predicted Functional Partners:
phbC
Poly-beta-hydroxybutyrate polymerase.
 
  
 0.955
LO55_4456
Poly-beta-hydroxybutyrate polymerase family protein.
 
  
 0.951
LO55_1574
Esterase_phb: esterase, PHB depolymerase family protein.
    
 0.846
LO55_3803
Alpha/beta hydrolase family protein.
 
  
 0.828
LO55_3108
Hypothetical protein.
 
  
 0.787
phaR
PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.757
LO55_1404
Esterase_phb: esterase, PHB depolymerase family protein.
    
 0.613
LO55_2548
Esterase_phb: esterase, PHB depolymerase family protein.
    
 0.613
LO55_2658
Esterase_phb: esterase, PHB depolymerase family protein.
    
 0.613
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.546
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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