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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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LO55_3473D-alanyl-D-alanine carboxypeptidase family protein; Belongs to the peptidase S11 family. (316 aa)    
Predicted Functional Partners:
LO55_338
Penicillin binding transpeptidase domain protein.
    
 0.748
LO55_3511
Penicillinase repressor family protein.
     
  0.674
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
 
 0.658
LO55_1523
Nucleoside recognition family protein.
  
  
 0.646
ftsI
Penicillin binding transpeptidase domain protein; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
 
 
 0.630
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
 
  
 0.549
dacB
PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
     
 0.487
LO55_4490
Penicillin binding transpeptidase domain protein.
 
 
 0.486
LO55_3442
Restriction endonuclease family protein.
     
 0.482
LO55_982
endonuclease/Exonuclease/phosphatase family protein.
  
  
  0.467
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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