Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3485Alpha/beta hydrolase fold family protein. (329 aa)    
Predicted Functional Partners:
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.853
LO55_3486
Pyridine nucleotide-disulfide oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.
 
     0.802
LO55_236
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.720
nuoF
NADH oxidoreductase (quinone), F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
  0.702
LO55_5172
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein.
    
  0.702
LO55_5171
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
    
  0.699
nuoE
nuoE_fam: NADH-quinone oxidoreductase, E subunit.
    
  0.694
LO55_1641
Alpha/beta hydrolase fold family protein.
  
     0.693
LO55_872
FAD dependent oxidoreductase family protein.
   
 
 0.686
LO55_3688
Alpha/beta hydrolase fold family protein.
  
     0.680
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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