STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3486Pyridine nucleotide-disulfide oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone. (558 aa)    
Predicted Functional Partners:
LO55_100
Electron transfer flavoFAD-binding domain protein.
 
 0.999
LO55_101
Electron transfer flavodomain protein.
 
 0.999
LO55_4019
Electron transfer flavoFAD-binding domain protein.
 
 0.999
LO55_4020
Electron transfer flavodomain protein.
 
 0.999
crtY
Lycopene_cycl: lycopene cyclase.
  
 
 0.910
LO55_506
FAD dependent oxidoreductase family protein.
  
 
 0.910
LO55_872
FAD dependent oxidoreductase family protein.
  
 
 0.834
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.829
LO55_3485
Alpha/beta hydrolase fold family protein.
 
   
 0.825
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
 
 0.808
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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