STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_349Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (225 aa)    
Predicted Functional Partners:
LO55_3418
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.894
fdnG
formate-DH-alph: formate dehydrogenase-N alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.894
LO55_5173
Fdh-alpha: formate dehydrogenase, alpha subunit.
   
 0.894
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
  
 0.869
rnfH
Protein rnfH; Belongs to the UPF0125 (RnfH) family.
 
   
 0.801
LO55_1199
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
 0.776
LO55_4021
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
 0.776
LO55_3426
4Fe-4S binding domain protein.
    
 0.774
LO55_1932
Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.
     
 0.729
maeB
NADP-dependent malic enzyme.
     
 0.729
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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