STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3495Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein. (393 aa)    
Predicted Functional Partners:
LO55_3496
Hypothetical protein.
 
     0.934
LO55_253
Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.853
LO55_3494
Hypothetical protein.
 
     0.850
LO55_1335
Aminotransferase class I and II family protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.847
galK-2
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 0.824
galK
Gal_kin: galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 0.823
LO55_848
wecB: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.804
lysS
lysS_bact: lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.800
LO55_3500
Glycosyl transferases group 1 family protein.
 
  
 0.784
LO55_3497
Hypothetical protein.
       0.783
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.