STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3507Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein. (127 aa)    
Predicted Functional Partners:
LO55_2415
Biopolymer transport ExbD/TolR family protein.
 
 
 0.816
LO55_2416
Biopolymer transport ExbD/TolR family protein.
 
 
 0.816
LO55_2417
motA/TolQ/ExbB proton channel family protein.
 
 
 0.799
LO55_3508
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
    
0.790
LO55_4919
Biopolymer transport ExbD/TolR family protein.
  
 
 0.790
LO55_5164
Biopolymer transport ExbD/TolR family protein.
  
 
 0.790
LO55_1613
motA/TolQ/ExbB proton channel family protein.
 
 
 0.789
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.760
LO55_5165
motA/TolQ/ExbB proton channel family protein.
  
 
 0.760
LO55_2168
Sensory box protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.754
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.