STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3510Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein. (423 aa)    
Predicted Functional Partners:
LO55_3511
Penicillinase repressor family protein.
 
 
 0.992
LO55_4966
Penicillinase repressor family protein.
 
 
 0.865
LO55_3509
Dienelactone hydrolase family protein.
 
     0.839
LO55_4965
Penicillin binding transpeptidase domain protein.
 
  
  0.742
LO55_3507
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
  
 
0.740
LO55_3508
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
  
 
0.740
LO55_4964
Penicillin binding transpeptidase domain protein.
 
  
  0.672
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
     
 0.604
LO55_669
ABC-2 type transporter family protein.
  
     0.552
LO55_150
ABC-2 transporter family protein.
  
     0.549
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.