Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3511Penicillinase repressor family protein. (128 aa)    
Predicted Functional Partners:
LO55_3510
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
 
 0.994
LO55_3509
Dienelactone hydrolase family protein.
 
     0.835
LO55_3507
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
    
  0.713
LO55_3508
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
    
  0.713
LO55_4966
Penicillinase repressor family protein.
     
  0.709
LO55_4113
Heavy-metal-associated domain protein.
  
  
 0.706
merP
merP: mercuric transport protein periplasmic component.
  
  
 0.706
LO55_2388
D-alanyl-D-alanine carboxypeptidase family protein; Belongs to the peptidase S11 family.
     
  0.674
LO55_3473
D-alanyl-D-alanine carboxypeptidase family protein; Belongs to the peptidase S11 family.
     
  0.674
LO55_3512
Response regulator.
       0.517
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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