Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LO55_1548 | LO55_3411 | LO55_1548 | LO55_3411 | Glutamine amidotransferases class-II family protein. | Helix-turn-helix domain protein. | 0.660 |
LO55_1548 | LO55_3464 | LO55_1548 | LO55_3464 | Glutamine amidotransferases class-II family protein. | HAMP domain protein. | 0.526 |
LO55_1548 | LO55_3515 | LO55_1548 | LO55_3515 | Glutamine amidotransferases class-II family protein. | Helix-turn-helix domain protein. | 0.660 |
LO55_1548 | LO55_3516 | LO55_1548 | LO55_3516 | Glutamine amidotransferases class-II family protein. | PHB_DH: 3-hydroxybutyrate dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.756 |
LO55_1548 | LO55_3639 | LO55_1548 | LO55_3639 | Glutamine amidotransferases class-II family protein. | His Kinase A domain protein. | 0.526 |
LO55_1548 | LO55_3883 | LO55_1548 | LO55_3883 | Glutamine amidotransferases class-II family protein. | Helix-turn-helix domain protein. | 0.660 |
LO55_3411 | LO55_1548 | LO55_3411 | LO55_1548 | Helix-turn-helix domain protein. | Glutamine amidotransferases class-II family protein. | 0.660 |
LO55_3411 | LO55_3464 | LO55_3411 | LO55_3464 | Helix-turn-helix domain protein. | HAMP domain protein. | 0.707 |
LO55_3411 | LO55_3515 | LO55_3411 | LO55_3515 | Helix-turn-helix domain protein. | Helix-turn-helix domain protein. | 0.685 |
LO55_3411 | LO55_3639 | LO55_3411 | LO55_3639 | Helix-turn-helix domain protein. | His Kinase A domain protein. | 0.707 |
LO55_3411 | LO55_3883 | LO55_3411 | LO55_3883 | Helix-turn-helix domain protein. | Helix-turn-helix domain protein. | 0.752 |
LO55_3411 | LO55_4472 | LO55_3411 | LO55_4472 | Helix-turn-helix domain protein. | Kinase domain protein. | 0.693 |
LO55_3411 | LO55_735 | LO55_3411 | LO55_735 | Helix-turn-helix domain protein. | Helix-turn-helix domain protein. | 0.451 |
LO55_3411 | ribB-2 | LO55_3411 | LO55_4900 | Helix-turn-helix domain protein. | 3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.635 |
LO55_3411 | rpoA | LO55_3411 | LO55_1066 | Helix-turn-helix domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.724 |
LO55_3464 | LO55_1548 | LO55_3464 | LO55_1548 | HAMP domain protein. | Glutamine amidotransferases class-II family protein. | 0.526 |
LO55_3464 | LO55_3411 | LO55_3464 | LO55_3411 | HAMP domain protein. | Helix-turn-helix domain protein. | 0.707 |
LO55_3464 | LO55_3515 | LO55_3464 | LO55_3515 | HAMP domain protein. | Helix-turn-helix domain protein. | 0.707 |
LO55_3464 | LO55_3639 | LO55_3464 | LO55_3639 | HAMP domain protein. | His Kinase A domain protein. | 0.999 |
LO55_3464 | LO55_3883 | LO55_3464 | LO55_3883 | HAMP domain protein. | Helix-turn-helix domain protein. | 0.707 |
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