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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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[Homology]
Score
LO55_3518Endoribonuclease L-PSP family protein. (116 aa)    
Predicted Functional Partners:
LO55_3519
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.803
LO55_3517
Alpha/beta hydrolase family protein.
    
  0.722
pheA
CM_P2: chorismate mutase.
    
 0.719
LO55_1409
Aminotransferase class IV family protein.
    
 0.677
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.598
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
 
 0.555
LO55_3515
Helix-turn-helix domain protein.
 
    0.511
LO55_3516
PHB_DH: 3-hydroxybutyrate dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.501
LO55_2855
Aminotransferase class I and II family protein.
   
  0.497
LO55_3520
Permease family protein.
       0.481
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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