Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3571Amidohydrolase family protein. (331 aa)    
Predicted Functional Partners:
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
    
  0.720
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
    
  0.684
LO55_3328
2Fe-2S iron-sulfur cluster binding domain protein.
    
  0.684
LO55_1011
Hypothetical protein.
  
     0.531
LO55_1523
Nucleoside recognition family protein.
   
    0.506
LO55_202
Antibiotic biosynthesis monooxygenase family protein.
 
     0.473
LO55_3570
yjdL_sub1_fam: amino acid/peptide transporter family protein.
       0.467
LO55_4003
Amidohydrolase family protein.
     
  0.466
LO55_4359
Dioxygenase family protein.
  
  
  0.444
LO55_3572
Hypothetical protein.
       0.438
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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