Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_3580ABC transporter family protein. (242 aa)    
Predicted Functional Partners:
LO55_3577
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.999
LO55_3578
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 0.999
LO55_3579
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 
 0.999
LO55_3483
Bacterial extracellular solute-binding s, 3 family protein.
 
 0.970
LO55_1548
Glutamine amidotransferases class-II family protein.
  
  
 0.800
LO55_2219
Binding--dependent transport system inner membrane component family protein.
    
  0.772
LO55_2221
Putative tungstate ABC transporter, periplasmic tungstate-binding protein.
  
 
  0.772
argG
argG: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.680
LO55_2574
ftsX-like permease family protein.
 
      0.678
phnE
phnE: phosphonate ABC transporter, permease protein PhnE.
    
 0.609
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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