Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
LO55_3585Aldo/keto reductase family protein. (337 aa)    
Predicted Functional Partners:
LO55_3322
pfkB carbohydrate kinase family protein.
    
 0.855
LO55_1775
pfkB carbohydrate kinase family protein.
    
 0.730
LO55_3025
Aldo/keto reductase family protein.
  
 0.687
aqpZ2
Aquaporin Z 2; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.647
LO55_1378
Histone deacetylase domain protein.
   
  0.633
LO55_29
Histone deacetylase domain protein.
   
  0.633
LO55_5185
Histone deacetylase domain protein.
   
  0.633
LO55_7
Histone deacetylase domain protein.
   
  0.633
LO55_1831
Aldo/keto reductase family protein.
  
 0.630
LO55_3861
Ankyrin repeat family protein.
    
 0.616
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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