STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_360Nitroreductase family protein. (212 aa)    
Predicted Functional Partners:
LO55_3689
ycaO-type kinase domain protein.
  
  
 0.764
LO55_1557
ABC-2 type transporter family protein.
  
  
 0.741
LO55_1157
Aminotransferase class-V family protein.
    
 0.731
LO55_4507
NADH:flavin oxidoreductase / NADH oxidase family protein.
    
 0.697
LO55_4790
hemX family protein.
   
 
 0.666
LO55_4791
uroporphyrinogen-III synthase HemD family protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
   
 
 0.666
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
   
 0.655
LO55_520
NADH:flavin oxidoreductase / NADH oxidase family protein.
    
 0.596
LO55_361
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
     0.570
LO55_1334
AMP-binding enzyme family protein.
   
   0.533
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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