Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3607Hypothetical protein; nfeD-like C-terminal, partner-binding family protein. (142 aa)    
Predicted Functional Partners:
LO55_3608
SPFH domain / Band 7 family protein.
 
 
 0.949
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.854
LO55_4894
Hypothetical protein; Putative dna polymerase III subunit gamma/tau (C-terminal) protein.
  
     0.748
LO55_1957
Putative membrane protein.
  
     0.744
LO55_4897
Transglycosylase SLT domain protein.
  
    0.696
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
  
 
 0.689
hflC
HflC protein; HflC and HflK could regulate a protease.
  
 
 0.689
LO55_3609
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.689
LO55_4429
SPFH domain / Band 7 family protein.
  
 
 0.689
LO55_2928
Hypothetical protein.
  
     0.687
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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