STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_362Hypothetical protein. (127 aa)    
Predicted Functional Partners:
LO55_363
ompA family protein.
  
 
 0.814
LO55_3997
Hypothetical protein.
    
 
 0.737
lolA
Outer membrane lipocarrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
 
 0.737
LO55_4844
Rubrerythrin family protein.
  
    0.688
LO55_1165
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
    
   0.612
LO55_2082
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
    
   0.612
LO55_2418
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
    
   0.612
LO55_242
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
    
   0.612
LO55_2685
Hypothetical protein.
    
   0.612
LO55_2820
Putative lipoprotein.
    
   0.612
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.