STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_364Chlorophyllase family protein. (232 aa)    
Predicted Functional Partners:
LO55_594
Dienelactone hydrolase family protein.
  
  
 
0.696
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.605
LO55_2571
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein.
   
 
 0.551
LO55_2293
Diacylglycerol kinase catalytic domain protein.
     
 0.514
LO55_4359
Dioxygenase family protein.
   
 
 0.451
alx
Inner membrane protein alx.
       0.450
fbp
Fructose-1-6-bisphosphatase family protein; Belongs to the FBPase class 1 family.
   
 
  0.449
LO55_363
ompA family protein.
  
    0.418
LO55_362
Hypothetical protein.
       0.411
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.