STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3666Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein. (468 aa)    
Predicted Functional Partners:
LO55_3674
Hypothetical protein.
 
  
 0.984
rhaD
rhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 
 0.961
rhaI
L_rham_iso_rhiz: L-rhamnose catabolism isomerase.
 
  
 0.924
rhaS
rhaS: rhamnose ABC transporter, rhamnose-binding protein.
 
  
 0.921
LO55_3667
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.895
LO55_3671
Bacterial regulatory, arsR family protein.
 
  
 0.890
LO55_3668
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.867
LO55_3669
ABC transporter family protein.
 
    0.797
rpe
Rpe: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.740
LO55_719
PTS_HPr_: phosphocarrier, HPr family protein.
    
 
 0.712
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.