STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3699Cytochrome c family protein. (465 aa)    
Predicted Functional Partners:
coxB
coxB: cytochrome c oxidase, subunit II.
  
 0.992
LO55_3698
Gluconate 2-dehydrogenase flavoprotein.
 
 
 0.983
LO55_1255
Hypothetical protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.970
LO55_872
FAD dependent oxidoreductase family protein.
  
 0.968
LO55_3697
Gluconate 2-dehydrogenase subunit 3 family protein.
 
  
 0.953
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.944
LO55_4074
Cytochrome c family protein.
  
 0.931
cyoC
cyoC: cytochrome o ubiquinol oxidase, subunit III.
  
 0.923
LO55_547
Cytochrome c oxidase subunit III family protein.
  
 0.923
ccoO
ccoO: cytochrome c oxidase, cbb3-type, subunit II.
  
 0.917
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.