STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_37Helix-hairpin-helix motif family protein. (113 aa)    
Predicted Functional Partners:
LO55_460
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.894
LO55_99
TM2 domain protein.
 
     0.740
gspF
gspF: type II secretion system protein F.
  
  
 0.725
LO55_4439
Type II secretion system (T2SS), F family protein.
  
  
 0.725
LO55_446
Type II secretion system (T2SS), F family protein.
  
  
 0.725
LO55_5116
Type II secretion system (T2SS), F family protein.
  
  
 0.725
LO55_2370
Barstar family protein.
  
     0.705
LO55_4363
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.663
LO55_36
Peptidase M20/M25/M40 family protein.
       0.628
LO55_4472
Kinase domain protein.
  
    0.618
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.