STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3707Glycosyl hydrolase family 20, catalytic domain protein. (853 aa)    
Predicted Functional Partners:
hutH
hutH: histidine ammonia-lyase.
   
    0.848
LO55_3706
Bacterial extracellular solute-binding family protein.
 
     0.774
LO55_81
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein.
    
 0.774
LO55_78
Putative N-acetylglucosamine kinase.
 
  
  0.732
LO55_3708
Bacterial extracellular solute-binding family protein.
 
     0.682
LO55_3709
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
     0.660
LO55_3710
HAMP domain protein.
 
     0.646
LO55_1610
marR family protein.
  
 
 0.618
LO55_1156
Glycosyltransferase 36 associated family protein.
    
 0.614
LO55_3703
Hypothetical protein.
 
     0.614
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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