Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nirBnitri_red_nirB: nitrite reductase [NAD(P)H], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (841 aa)    
Predicted Functional Partners:
nirD
nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit.
 
 0.999
LO55_368
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 0.994
LO55_372
Major Facilitator Superfamily protein.
 
 
 0.994
LO55_369
NAD(P)-binding family protein.
 
  
 
0.973
LO55_2088
Rubredoxin family protein.
  
 0.920
LO55_1861
Glutamine synthetase, beta-Grasp domain protein.
    
 0.878
LO55_1757
Bacterial NAD-glutamate dehydrogenase family protein.
    
 0.867
LO55_1400
Nitronate monooxygenase family protein.
     
 0.852
LO55_2652
Nitronate monooxygenase family protein.
     
 0.852
LO55_4970
Dihydroorotate dehydrogenase family protein.
     
 0.852
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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