Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_373NMT1-like family protein. (389 aa)    
Predicted Functional Partners:
LO55_4928
ntrCD: nitrate ABC transporter, ATP-binding s C and D family protein.
 0.973
LO55_2627
ntrCD: nitrate ABC transporter, ATP-binding s C and D family protein.
 0.970
ntrB
ntrB: nitrate ABC transporter, permease protein.
 
 0.966
ntrB-2
ntrB: nitrate ABC transporter, permease protein.
 
 0.966
LO55_368
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.957
LO55_498
Binding--dependent transport system inner membrane component family protein.
 
 0.946
LO55_2920
Binding--dependent transport system inner membrane component family protein.
 
 0.920
LO55_818
Binding--dependent transport system inner membrane component family protein.
 
 0.919
LO55_374
Response regulator.
 
  
 0.917
LO55_2054
Binding--dependent transport system inner membrane component family protein.
 
 0.902
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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