STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3731Putative autotransporter. (708 aa)    
Predicted Functional Partners:
ysxC
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
   
    0.901
LO55_3730
Haloacid dehalogenase-like hydrolase family protein.
 
     0.800
LO55_3729
Sodium Bile acid symporter family protein.
       0.757
LO55_3728
Hypothetical protein.
 
     0.563
LO55_3735
Type I phosphodiesterase / nucleotide pyrophosphatase family protein.
 
     0.528
LO55_3732
Autotransporter domain protein.
       0.510
LO55_3727
Hypothetical protein.
       0.492
LO55_3733
Hypothetical protein.
       0.454
LO55_3734
Hypothetical protein.
       0.443
LO55_3737
Sulfatase-modifying factor enzyme 1 family protein.
 
    0.408
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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