STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3750Von Willebrand factor type A domain protein. (449 aa)    
Predicted Functional Partners:
LO55_3752
tadE-like family protein.
 
    0.746
LO55_3751
tadE-like family protein.
  
    0.688
LO55_3762
Response regulator.
 
    0.626
cpaB-2
pilus_cpaB: Flp pilus assembly protein CpaB.
 
    0.619
LO55_3764
Type II secretion system (T2SS), F family protein.
 
     0.611
LO55_3765
Type II secretion system (T2SS), F family protein.
 
     0.606
LO55_3763
Type II/IV secretion system family protein.
 
    0.591
LO55_3760
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
 
     0.560
LO55_1298
Type II secretion system (T2SS), F family protein.
 
     0.547
LO55_1297
Type II secretion system (T2SS), F family protein.
 
     0.535
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.