Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3753Histidine kinase family protein. (573 aa)    
Predicted Functional Partners:
LO55_3754
Bacterial regulatory s, luxR family protein.
 
 0.946
LO55_3464
HAMP domain protein.
  
 0.899
LO55_3639
His Kinase A domain protein.
  
 0.899
LO55_4555
Sensory box protein.
  
 0.835
LO55_2695
His Kinase A domain protein.
  
 0.823
LO55_2168
Sensory box protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 0.813
LO55_3631
Sensory box protein.
  
 0.813
LO55_2508
Bacterial regulatory s, luxR family protein.
 
 0.795
LO55_1164
Bacterial regulatory s, luxR family protein.
 
 0.790
LO55_3881
Bacterial regulatory s, luxR family protein.
 
 0.789
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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