Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LO55_3755Hypothetical protein. (55 aa)    
Predicted Functional Partners:
LO55_3756
flp/Fap pilin component family protein.
       0.655
LO55_3757
Type IV leader peptidase family protein.
       0.476
LO55_3758
Putative aTPase.
       0.476
cpaB-2
pilus_cpaB: Flp pilus assembly protein CpaB.
       0.476
LO55_3760
Bacterial type II and III secretion system family protein; Belongs to the bacterial secretin family.
       0.457
LO55_3761
Putative lipoprotein.
       0.457
LO55_3754
Bacterial regulatory s, luxR family protein.
       0.452
LO55_3762
Response regulator.
       0.431
LO55_3753
Histidine kinase family protein.
       0.412
LO55_3763
Type II/IV secretion system family protein.
       0.408
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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