Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3787Hypothetical protein. (515 aa)    
Predicted Functional Partners:
LO55_3785
ATPase associated with various cellular activities family protein.
 
     0.922
LO55_3784
Hypothetical protein.
 
   0.901
LO55_3775
vgr_GE: Rhs element Vgr family protein.
 
     0.890
LO55_3777
Putative tail lysozyme.
 
     0.890
LO55_3781
Hypothetical protein.
 
     0.890
LO55_3772
Conserved hypothetical phage tail region family protein.
 
     0.889
LO55_3778
Hypothetical protein.
 
     0.889
LO55_3774
Hypothetical protein.
 
     0.888
LO55_3783
Hypothetical protein.
 
   0.883
LO55_3776
PAAR motif family protein.
 
     0.881
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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