STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaE1-2rfaE_dom_I: bifunctional protein RfaE, domain I. (325 aa)    
Predicted Functional Partners:
rfaE2
rfaE_dom_II: bifunctional protein RfaE, domain II.
   
 0.982
LO55_2110
HAD-SF-IIIA: HAD hydrolase, family IIIA domain protein.
 
  
 0.949
gmhA-2
SIS domain protein; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
  
 0.942
gmhA
gmhA: phosphoheptose isomerase.
 
  
 0.942
LO55_2759
HAD-SF-IIIA: HAD hydrolase, family IIIA domain protein.
 
  
 0.872
waaF
heptsyl_trn_II: lipopolysaccharide heptosyltransferase II.
 
  
 0.871
waaC
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
 
  
 0.865
rfaD
ADP-glyceromanno-heptose 6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
 
 0.864
rfaD-2
Heptose_epim: ADP-glyceromanno-heptose 6-epimerase.
 
 
 0.860
LO55_1645
Glycosyltransferase 9 family protein.
 
  
 0.813
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.