STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garDgalactar-dH20: galactarate dehydratase. (513 aa)    
Predicted Functional Partners:
LO55_3158
D-glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.914
LO55_2238
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein.
 
 
 0.898
gudD
Glucar-dehydr: glucarate dehydratase.
 
 
 0.898
kdgD
kdgD: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.897
LO55_3347
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein.
 
  
 0.809
LO55_3815
Aldose 1-epimerase family protein.
 
     0.770
LO55_3814
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
   
 0.765
LO55_3816
Glycosyl hydrolases 43 family protein.
 
     0.746
LO55_3810
Glycosyl hydrolases 28 family protein; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.682
LO55_3822
Bacterial regulatory s, gntR family protein.
 
   
 0.679
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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