STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pelPectate lyase. (384 aa)    
Predicted Functional Partners:
yesW
Rhamnogalacturonan lyase yesW.
  
  
 0.825
LO55_4214
BNR/Asp-box repeat family protein.
 
  
 0.824
LO55_3821
GDSL-like Lipase/Acylhydrolase family protein.
 
  
 0.802
pel-2
Pectate lyase.
 
  
0.801
LO55_3680
Hypothetical protein.
  
  
 0.782
LO55_3647
Hypothetical protein.
  
  
 0.766
LO55_3810
Glycosyl hydrolases 28 family protein; Belongs to the glycosyl hydrolase 28 family.
    
 0.728
LO55_2954
GDSL-like Lipase/Acylhydrolase family protein.
 
  
 0.688
LO55_4405
GDSL-like Lipase/Acylhydrolase family protein.
 
  
 0.685
LO55_3156
GDSL-like Lipase/Acylhydrolase family protein.
 
  
 0.677
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.